British Airways has apologised to passengers for delays after an IT glitch hit check-in systems.
Angry travellers complained of hours queuing at airports but the airline said it is not a worldwide problem as some passengers had described it.
However, issues were reported by passengers on social media from airports in Seattle, the Bahamas and Heathrow.
@British_Airways management of the ridiculous queues at Gatwick bag drop this morning was appalling! Very unhappy customer!
-- Victoria Ellis (@ellis_v) September 6, 2016
-- Jennifer Bestor (@JLBxK) September 6, 2016
A spokeswoman confirmed passengers are being checked in at Heathrow and Gatwick, but said the process would be "a bit slower than usual".
Asked where the IT problems are, the spokeswoman said: "It is patchy."
Responding to passengers on Twitter, the airline wrote: "We apologise to our customers for the delay and we appreciate their patience as our IT teams work to resolve this issue."
It added: "Our colleagues are doing everything possible to check in customers for their journey."
Staff with clipboards were writing manual boarding passes for passengers, one delayed traveller at Seattle Airport said.
-- Kirsty Nicholls (@SotonKAN) September 6, 2016
Matthew Walker had been waiting for more than two hours to board his flight back to Heathrow.
The 29-year-old financial analyst, who lives in London but is originally from Australia, checked in online before arriving to catch his flight but said staff on the ground could not access their computer systems to see which passengers had gone through security.
Speaking from the airport, he told the Press Association: "People were lining up, some had already checked in and got through security, but others, when this thing happened, whatever it is, were stuck in the check-in queue."
In July the airline had to apologise after a glitch in its new check-in system caused delays.
BA began installing the new system at airports across the world in October last year and the roll-out was completed earlier this year.
According to the company's twitter account, services at Gatwick and Heathrow are now checking in normally.
@tixmeeoff Hi Brian, we're now checking in passengers as normal at Heathrow and Gatwick. ^Charlotte
-- British Airways (@British_Airways) September 6, 2016
Earlier, the airline said in a statement: "We are checking in customers at Heathrow and Gatwick Airport this morning, although it is taking longer than usual.
"We would encourage customers to check in online before they reach the airport.
"We are sorry for the delay to their journeys."
-- Karen Reyburn (@karenlreyburn) September 6, 2016
As usual, folks on Twitter were quick to suggest solutions; one in particular.
Hey @British_Airways Have you tried turning it off and back on again?
-- Marc Van de Velde (@MarcFVandeVelde) September 6, 2016
-- Tim King (@ITGeekTim) September 6, 2016